Since the Ben Langmead version has been languishing a bit, I forked the repo, and incorporated most of the pull requests (with some edits): https://github.com/earonesty/bowtie Support for compiling on Apple, stream i/o, and gzip support has been added.
New verison of bowtie-1.0
New verison of bowtie-1.0
New verison of bowtie-1.0
Since the Ben Langmead version has been languishing a bit, I forked the repo, and incorporated most of the pull requests (with some edits): https://github.com/earonesty/bowtie Support for compiling on Apple, stream i/o, and gzip support has been added.